Sorry but i do not quite understand what you mean by "rclone supports SSE" . I use crypt but it is client side. So you mean that enabling SSE in B2 i could still upload my files with rclone and they will be encrypted by B2 SSE?
rclone using crypt remote - always client side encryption.
i just read the documetion for B2 SSE - it does not match AWS S3 SSE API so rclone will not work with B2 SSE.
tho you can use custom headers to make it work.
while you cannot use versioning with rclone crypt, you can use --backup-dir to simulate it.