Here is the very same set of files but specifying a larger chunk size (larger than any file) and everything looks fine:
log
[nix-shell:~]# ./rclone-v1.70.3-linux-amd64/rclone sync --config /data/rclone.conf test/ crypt-test:testnewrcloneversion --delete-after --stats-log-level NOTICE --fast-list -vv --azureblob-chunk-size 128Mi
2025/07/31 10:55:19 DEBUG : rclone: Version "v1.70.3" starting with parameters ["./rclone-v1.70.3-linux-amd64/rclone" "sync" "--config" "/data/rclone.conf" "test/" "crypt-test:testnewrcloneversion" "--delete-after" "--stats-log-level" "NOTICE" "--fast-list" "-vv" "--azureblob-chunk-size" "128Mi"]
2025/07/31 10:55:19 DEBUG : Creating backend with remote "test/"
Enter configuration password:
password:
2025/07/31 10:55:23 DEBUG : Using config file from "/data/rclone.conf"
2025/07/31 10:55:23 DEBUG : fs cache: renaming cache item "test/" to be canonical "/root/test"
2025/07/31 10:55:23 DEBUG : Creating backend with remote "crypt-test:testnewrcloneversion"
2025/07/31 10:55:23 DEBUG : Creating backend with remote "azure:test/mj1vmku4nu5hk6fi9vv3l80v5lujn30u7iurdshp97pggm1mm5jg"
2025/07/31 10:55:23 DEBUG : azure: detected overridden config - adding "{OgfZc}" suffix to name
2025/07/31 10:55:24 DEBUG : fs cache: renaming cache item "azure:test/mj1vmku4nu5hk6fi9vv3l80v5lujn30u7iurdshp97pggm1mm5jg" to be canonical "azure{OgfZc}:test/mj1vmku4nu5hk6fi9vv3l80v5lujn30u7iurdshp97pggm1mm5jg"
2025/07/31 10:55:24 DEBUG : fs cache: switching user supplied name "azure:test/mj1vmku4nu5hk6fi9vv3l80v5lujn30u7iurdshp97pggm1mm5jg" for canonical name "azure{OgfZc}:test/mj1vmku4nu5hk6fi9vv3l80v5lujn30u7iurdshp97pggm1mm5jg"
2025/07/31 10:55:25 DEBUG : a1: Need to transfer - File not found at Destination
2025/07/31 10:55:25 DEBUG : a2: Need to transfer - File not found at Destination
2025/07/31 10:55:25 DEBUG : a3: Need to transfer - File not found at Destination
2025/07/31 10:55:25 DEBUG : a4: Need to transfer - File not found at Destination
2025/07/31 10:55:25 DEBUG : a5: Need to transfer - File not found at Destination
2025/07/31 10:55:25 DEBUG : a6: Need to transfer - File not found at Destination
2025/07/31 10:55:25 DEBUG : a7: Need to transfer - File not found at Destination
2025/07/31 10:55:25 DEBUG : a8: Need to transfer - File not found at Destination
2025/07/31 10:55:25 DEBUG : a9: Need to transfer - File not found at Destination
2025/07/31 10:55:25 DEBUG : Encrypted drive 'crypt-test:testnewrcloneversion': Waiting for checks to finish
2025/07/31 10:55:25 DEBUG : Encrypted drive 'crypt-test:testnewrcloneversion': Waiting for transfers to finish
2025/07/31 10:55:25 DEBUG : a3: Computing md5 hash of encrypted source
2025/07/31 10:55:25 DEBUG : a2: Computing md5 hash of encrypted source
2025/07/31 10:55:25 DEBUG : a4: Computing md5 hash of encrypted source
2025/07/31 10:55:25 DEBUG : a1: Computing md5 hash of encrypted source
2025/07/31 10:56:24 NOTICE:
Transferred: 244.200 MiB / 549.316 MiB, 44%, 974.137 KiB/s, ETA 5m20s
Checks: 0 / 0, -, Listed 9
Transferred: 0 / 9, 0%
Elapsed time: 1m0.0s
Transferring:
-
a1:100% /61.035Mi, 243.563Ki/s, -
-
a2:100% /61.035Mi, 243.562Ki/s, -
-
a4:100% /61.035Mi, 243.539Ki/s, -
-
a3:100% /61.035Mi, 243.527Ki/s, -
2025/07/31 10:57:24 NOTICE:
Transferred: 244.200 MiB / 549.316 MiB, 44%, 20.271 KiB/s, ETA 4h16m52s
Checks: 0 / 0, -, Listed 9
Transferred: 0 / 9, 0%
Elapsed time: 1m59.9s
Transferring:
-
a1:100% /61.035Mi, 5.068Ki/s, -
-
a2:100% /61.035Mi, 5.068Ki/s, -
-
a4:100% /61.035Mi, 5.067Ki/s, -
-
a3:100% /61.035Mi, 5.067Ki/s, -
2025/07/31 10:58:08 DEBUG : a2: md5 = f3426fcf8277f3d13ea1c3e4da7d5734 OK
2025/07/31 10:58:08 INFO : a2: Copied (new)
2025/07/31 10:58:08 DEBUG : a5: Computing md5 hash of encrypted source
2025/07/31 10:58:24 NOTICE:
Transferred: 305.250 MiB / 549.331 MiB, 56%, 1.450 MiB/s, ETA 2m48s
Checks: 0 / 0, -, Listed 9
Transferred: 1 / 9, 11%
Elapsed time: 3m0.0s
Transferring:
-
a1:100% /61.035Mi, 108/s, -
-
a4:100% /61.035Mi, 107/s, -
-
a3:100% /61.035Mi, 107/s, -
-
a5:100% /61.035Mi, 3.815Mi/s, -
2025/07/31 10:58:28 DEBUG : a3: md5 = ad03d71881891ed7802dbf8977cce190 OK
2025/07/31 10:58:28 INFO : a3: Copied (new)
2025/07/31 10:58:28 DEBUG : a6: Computing md5 hash of encrypted source
2025/07/31 10:58:35 DEBUG : a4: md5 = ed01c791a1e7de1afa89d8f5d03bb17b OK
2025/07/31 10:58:35 INFO : a4: Copied (new)
2025/07/31 10:58:35 DEBUG : a7: Computing md5 hash of encrypted source
2025/07/31 10:58:51 DEBUG : a1: md5 = f1e0f818270fde2614ec6866d28683ed OK
2025/07/31 10:58:51 INFO : a1: Copied (new)
2025/07/31 10:58:51 DEBUG : a8: Computing md5 hash of encrypted source
2025/07/31 10:59:24 NOTICE:
Transferred: 488.401 MiB / 549.376 MiB, 89%, 862.502 KiB/s, ETA 1m12s
Checks: 0 / 0, -, Listed 9
Transferred: 4 / 9, 44%
Elapsed time: 4m0.0s
Transferring:
-
a5:100% /61.035Mi, 81.304Ki/s, -
-
a6:100% /61.035Mi, 295.591Ki/s, -
-
a7:100% /61.035Mi, 464.396Ki/s, -
-
a8:100% /61.035Mi, 1.359Mi/s, -
2025/07/31 11:00:24 NOTICE:
Transferred: 488.401 MiB / 549.376 MiB, 89%, 17.948 KiB/s, ETA 57m58s
Checks: 0 / 0, -, Listed 9
Transferred: 4 / 9, 44%
Elapsed time: 4m59.9s
Transferring:
-
a5:100% /61.035Mi, 1.691Ki/s, -
-
a6:100% /61.035Mi, 6.150Ki/s, -
-
a7:100% /61.035Mi, 9.664Ki/s, -
-
a8:100% /61.035Mi, 28.950Ki/s, -
2025/07/31 11:00:25 DEBUG : a5: md5 = c41c31b5980104e4d838995f3f82a29b OK
2025/07/31 11:00:25 INFO : a5: Copied (new)
2025/07/31 11:00:25 DEBUG : a9: Computing md5 hash of encrypted source
2025/07/31 11:00:50 DEBUG : a6: md5 = 13fe90c87a8b99ff99bec69cb8a28923 OK
2025/07/31 11:00:50 INFO : a6: Copied (new)
2025/07/31 11:00:57 DEBUG : a7: md5 = b6885636a7b218312d179baf51dec9d6 OK
2025/07/31 11:00:57 INFO : a7: Copied (new)
2025/07/31 11:01:24 NOTICE:
Transferred: 549.451 MiB / 549.421 MiB, 100%, 92.886 KiB/s, ETA -
Checks: 0 / 0, -, Listed 9
Transferred: 7 / 9, 78%
Elapsed time: 6m0.0s
Transferring:
-
a8:100% /61.035Mi, 616/s, -
-
a9:100% /61.035Mi, 243.496Ki/s, -
2025/07/31 11:01:34 DEBUG : a8: md5 = da3b4b9ead1639b5387cb34ffd80f8ef OK
2025/07/31 11:01:34 INFO : a8: Copied (new)
2025/07/31 11:02:24 NOTICE:
Transferred: 549.451 MiB / 549.436 MiB, 100%, 1.933 KiB/s, ETA -
Checks: 0 / 0, -, Listed 9
Transferred: 8 / 9, 89%
Elapsed time: 6m59.9s
Transferring:
2025/07/31 11:02:29 DEBUG : a9: md5 = 9141d5818c02723511232d1254fed560 OK
2025/07/31 11:02:29 INFO : a9: Copied (new)
2025/07/31 11:02:29 DEBUG : Waiting for deletions to finish
2025/07/31 11:02:29 NOTICE:
Transferred: 549.451 MiB / 549.451 MiB, 100%, 1.399 KiB/s, ETA 0s
Checks: 0 / 0, -, Listed 9
Transferred: 9 / 9, 100%
Elapsed time: 7m4.9s
2025/07/31 11:02:29 DEBUG : 7 go routines active