IDrive e2 is duplicating new uploaded files because of versioning

Can you try it without your OS file explorer?

Does

cp localfile /media/idrive/

create versions too?

If not than maybe it is your file explorer problem - the way how it handles copy operations.

You could try to fix it by using:

--vfs-write-back duration  Time to writeback files after last use when using cache (default 5s)

and increase it value.

BTW

does nothing here as S3 is not polling remote.